diff --git a/lib/init.js b/lib/init.js
index bb0e00503..d4b13fe31 100644
--- a/lib/init.js
+++ b/lib/init.js
@@ -123,16 +123,22 @@ async function injectWindowsTracer(processName, processLevel, config, codeql, tr
 exports.injectWindowsTracer = injectWindowsTracer;
 async function installPythonDeps(codeql, logger) {
     logger.startGroup("Setup Python dependencies");
-    if (process.platform !== "linux") {
-        logger.info("Currently, auto-installing python dependancies is only supported on linux");
+    if (process.platform === "darwin") {
+        logger.info("Currently, auto-installing python dependancies is not supported on MacOS");
         logger.endGroup();
         return;
     }
+    let install_tools_script = "install_tools.sh";
+    let auto_install_packages_script = "auto_install_packages.py";
+    if (process.platform === "win32") {
+        install_tools_script = "install_tools.ps1";
+        auto_install_packages_script = "auto_install_packages_windows.py";
+    }
     const scriptsFolder = path.resolve(__dirname, "../python-setup");
     // Setup tools on the Github hosted runners
     if (process.env["ImageOS"] !== undefined) {
         try {
-            await new toolrunnner.ToolRunner(path.join(scriptsFolder, "install_tools.sh")).exec();
+            await new toolrunnner.ToolRunner(path.join(scriptsFolder, install_tools_script)).exec();
         }
         catch (e) {
             // This script tries to install some needed tools in the runner. It should not fail, but if it does
@@ -143,7 +149,7 @@ async function installPythonDeps(codeql, logger) {
     }
     // Install dependencies
     try {
-        await new toolrunnner.ToolRunner(path.join(scriptsFolder, "auto_install_packages.py"), [path.dirname(codeql.getPath())]).exec();
+        await new toolrunnner.ToolRunner(path.join(scriptsFolder, auto_install_packages_script), [path.dirname(codeql.getPath())]).exec();
     }
     catch (e) {
         logger.endGroup();
diff --git a/lib/init.js.map b/lib/init.js.map
index dd4458cb4..68aaa5736 100644
--- a/lib/init.js.map
+++ b/lib/init.js.map
@@ -1 +1 @@
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\ No newline at end of file
+{"version":3,"file":"init.js","sourceRoot":"","sources":["../src/init.ts"],"names":[],"mappings":";;;;;;;;;AAAA,uCAAyB;AACzB,2CAA6B;AAE7B,0EAA4D;AAE5D,gEAAkD;AAClD,qCAA+C;AAC/C,4DAA8C;AAG9C,mDAAwE;AACxE,6CAA+B;AAExB,KAAK,UAAU,UAAU,CAC9B,SAA6B,EAC7B,UAAkB,EAClB,SAAiB,EACjB,OAAe,EACf,QAAgB,EAChB,IAAe,EACf,MAAc;IAEd,MAAM,CAAC,UAAU,CAAC,oBAAoB,CAAC,CAAC;IACxC,MAAM,MAAM,GAAG,MAAM,oBAAW,CAC9B,SAAS,EACT,UAAU,EACV,SAAS,EACT,OAAO,EACP,QAAQ,EACR,IAAI,EACJ,MAAM,CACP,CAAC;IACF,MAAM,MAAM,CAAC,YAAY,EAAE,CAAC;IAC5B,MAAM,CAAC,QAAQ,EAAE,CAAC;IAClB,OAAO,MAAM,CAAC;AAChB,CAAC;AAtBD,gCAsBC;AAEM,KAAK,UAAU,UAAU,CAC9B,cAAkC,EAClC,YAAgC,EAChC,UAA8B,EAC9B,UAAyB,EACzB,OAAe,EACf,YAAoB,EACpB,MAAc,EACd,YAAoB,EACpB,UAAkB,EAClB,SAAiB,EACjB,MAAc;IAEd,MAAM,CAAC,UAAU,CAAC,6BAA6B,CAAC,CAAC;IACjD,MAAM,MAAM,GAAG,MAAM,WAAW,CAAC,UAAU,CACzC,cAAc,EACd,YAAY,EACZ,UAAU,EACV,UAAU,EACV,OAAO,EACP,YAAY,EACZ,MAAM,EACN,YAAY,EACZ,UAAU,EACV,SAAS,EACT,MAAM,CACP,CAAC;IACF,aAAa,CAAC,uBAAuB,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACtD,MAAM,CAAC,QAAQ,EAAE,CAAC;IAClB,OAAO,MAAM,CAAC;AAChB,CAAC;AA9BD,gCA8BC;AAEM,KAAK,UAAU,OAAO,CAC3B,MAAc,EACd,MAA0B;IAE1B,MAAM,UAAU,GAAG,IAAI,CAAC,OAAO,EAAE,CAAC;IAElC,EAAE,CAAC,SAAS,CAAC,IAAI,CAAC,qBAAqB,CAAC,MAAM,CAAC,OAAO,CAAC,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IAE9E,sEAAsE;IACtE,KAAK,MAAM,QAAQ,IAAI,MAAM,CAAC,SAAS,EAAE;QACvC,yBAAyB;QACzB,MAAM,MAAM,CAAC,YAAY,CACvB,IAAI,CAAC,qBAAqB,CAAC,MAAM,CAAC,OAAO,EAAE,QAAQ,CAAC,EACpD,QAAQ,EACR,UAAU,CACX,CAAC;KACH;IAED,OAAO,MAAM,uCAAuB,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;AACvD,CAAC;AAnBD,0BAmBC;AAED,sEAAsE;AACtE,4EAA4E;AAC5E,4EAA4E;AAC5E,6EAA6E;AAC7E,+CAA+C;AACxC,KAAK,UAAU,mBAAmB,CACvC,WAA+B,EAC/B,YAAgC,EAChC,MAA0B,EAC1B,MAAc,EACd,YAA0B;IAE1B,IAAI,MAAc,CAAC;IACnB,IAAI,WAAW,KAAK,SAAS,EAAE;QAC7B,MAAM,GAAG;;;;;;;;;;;;uCAY0B,WAAW;;8BAEpB,WAAW;;;;;;;;gDAQO,CAAC;KAC9C;SAAM;QACL,oEAAoE;QACpE,mFAAmF;QACnF,+EAA+E;QAC/E,kFAAkF;QAClF,6EAA6E;QAC7E,oFAAoF;QACpF,6CAA6C;QAC7C,YAAY,GAAG,YAAY,IAAI,CAAC,CAAC;QACjC,MAAM,GAAG;;;;;;;;4BAQe,YAAY;;;;;;;;;;;;;;;;;gDAiBQ,CAAC;KAC9C;IAED,MAAM,gBAAgB,GAAG,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE,mBAAmB,CAAC,CAAC;IACxE,EAAE,CAAC,aAAa,CAAC,gBAAgB,EAAE,MAAM,CAAC,CAAC;IAE3C,MAAM,IAAI,WAAW,CAAC,UAAU,CAC9B,YAAY,EACZ;QACE,kBAAkB;QAClB,QAAQ;QACR,OAAO;QACP,gBAAgB;QAChB,IAAI,CAAC,OAAO,CACV,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC,EAC9B,OAAO,EACP,OAAO,EACP,YAAY,CACb;KACF,EACD,EAAE,GAAG,EAAE,EAAE,0BAA0B,EAAE,YAAY,CAAC,IAAI,EAAE,EAAE,CAC3D,CAAC,IAAI,EAAE,CAAC;AACX,CAAC;AAxFD,kDAwFC;AAEM,KAAK,UAAU,iBAAiB,CAAC,MAAc,EAAE,MAAc;IACpE,MAAM,CAAC,UAAU,CAAC,2BAA2B,CAAC,CAAC;IAE/C,IAAI,OAAO,CAAC,QAAQ,KAAK,QAAQ,EAAE;QACjC,MAAM,CAAC,IAAI,CACT,0EAA0E,CAC3E,CAAC;QACF,MAAM,CAAC,QAAQ,EAAE,CAAC;QAClB,OAAO;KACR;IAED,IAAI,oBAAoB,GAAG,kBAAkB,CAAC;IAC9C,IAAI,4BAA4B,GAAG,0BAA0B,CAAC;IAE9D,IAAI,OAAO,CAAC,QAAQ,KAAK,OAAO,EAAE;QAChC,oBAAoB,GAAG,mBAAmB,CAAC;QAC3C,4BAA4B,GAAG,kCAAkC,CAAC;KACnE;IAED,MAAM,aAAa,GAAG,IAAI,CAAC,OAAO,CAAC,SAAS,EAAE,iBAAiB,CAAC,CAAC;IAEjE,2CAA2C;IAC3C,IAAI,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,KAAK,SAAS,EAAE;QACxC,IAAI;YACF,MAAM,IAAI,WAAW,CAAC,UAAU,CAC9B,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,oBAAoB,CAAC,CAC/C,CAAC,IAAI,EAAE,CAAC;SACV;QAAC,OAAO,CAAC,EAAE;YACV,mGAAmG;YACnG,uDAAuD;YACvD,MAAM,CAAC,QAAQ,EAAE,CAAC;YAClB,MAAM,CAAC,OAAO,CACZ,kLAAkL,CACnL,CAAC;SACH;KACF;IAED,uBAAuB;IACvB,IAAI;QACF,MAAM,IAAI,WAAW,CAAC,UAAU,CAC9B,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,4BAA4B,CAAC,EACtD,CAAC,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC,CAAC,CACjC,CAAC,IAAI,EAAE,CAAC;KACV;IAAC,OAAO,CAAC,EAAE;QACV,MAAM,CAAC,QAAQ,EAAE,CAAC;QAClB,MAAM,CAAC,OAAO,CACZ,+IAA+I,CAChJ,CAAC;KACH;IACD,MAAM,CAAC,QAAQ,EAAE,CAAC;AACpB,CAAC;AAlDD,8CAkDC"}
\ No newline at end of file
diff --git a/src/init.ts b/src/init.ts
index 6a738a090..e39c7dcd7 100644
--- a/src/init.ts
+++ b/src/init.ts
@@ -186,21 +186,29 @@ export async function injectWindowsTracer(
 export async function installPythonDeps(codeql: CodeQL, logger: Logger) {
   logger.startGroup("Setup Python dependencies");
 
-  if (process.platform !== "linux") {
+  if (process.platform === "darwin") {
     logger.info(
-      "Currently, auto-installing python dependancies is only supported on linux"
+      "Currently, auto-installing python dependancies is not supported on MacOS"
     );
     logger.endGroup();
     return;
   }
 
+  let install_tools_script = "install_tools.sh";
+  let auto_install_packages_script = "auto_install_packages.py";
+
+  if (process.platform === "win32") {
+    install_tools_script = "install_tools.ps1";
+    auto_install_packages_script = "auto_install_packages_windows.py";
+  }
+
   const scriptsFolder = path.resolve(__dirname, "../python-setup");
 
   // Setup tools on the Github hosted runners
   if (process.env["ImageOS"] !== undefined) {
     try {
       await new toolrunnner.ToolRunner(
-        path.join(scriptsFolder, "install_tools.sh")
+        path.join(scriptsFolder, install_tools_script)
       ).exec();
     } catch (e) {
       // This script tries to install some needed tools in the runner. It should not fail, but if it does
@@ -215,7 +223,7 @@ export async function installPythonDeps(codeql: CodeQL, logger: Logger) {
   // Install dependencies
   try {
     await new toolrunnner.ToolRunner(
-      path.join(scriptsFolder, "auto_install_packages.py"),
+      path.join(scriptsFolder, auto_install_packages_script),
       [path.dirname(codeql.getPath())]
     ).exec();
   } catch (e) {