From 9de26cc0e6764795a15e3a3eda9577683fe4366a Mon Sep 17 00:00:00 2001
From: Timothy Middelkoop <tmiddelkoop@internet2.edu>
Date: Wed, 22 May 2024 19:29:36 +0000
Subject: [PATCH] More renaming

---
 prep/{Instructor_Notes.Rmd => Instructor.Rmd} |  0
 ...ebook.ipynb => Preparation-Notebook.ipynb} |  0
 prep/{RStudio.Rmd => Preparation-RStudio.Rmd} |  8 +------
 prep/Setup.Rmd                                | 23 +++++++++++++++++++
 4 files changed, 24 insertions(+), 7 deletions(-)
 rename prep/{Instructor_Notes.Rmd => Instructor.Rmd} (100%)
 rename prep/{Notebook.ipynb => Preparation-Notebook.ipynb} (100%)
 rename prep/{RStudio.Rmd => Preparation-RStudio.Rmd} (71%)
 create mode 100644 prep/Setup.Rmd

diff --git a/prep/Instructor_Notes.Rmd b/prep/Instructor.Rmd
similarity index 100%
rename from prep/Instructor_Notes.Rmd
rename to prep/Instructor.Rmd
diff --git a/prep/Notebook.ipynb b/prep/Preparation-Notebook.ipynb
similarity index 100%
rename from prep/Notebook.ipynb
rename to prep/Preparation-Notebook.ipynb
diff --git a/prep/RStudio.Rmd b/prep/Preparation-RStudio.Rmd
similarity index 71%
rename from prep/RStudio.Rmd
rename to prep/Preparation-RStudio.Rmd
index 8581894..b739610 100644
--- a/prep/RStudio.Rmd
+++ b/prep/Preparation-RStudio.Rmd
@@ -1,19 +1,13 @@
 ---
-title: "Lesson Preparation"
 output: html_document
 editor_options: 
   chunk_output_type: console
 ---
-See [Setup.Rmd](Setup.Rmd) for setting up RStudio environment..
-
 # R Ecology
 
 ## Install Packages
 
-```{r message=FALSE, warning=FALSE}
-options(repos = list(CRAN="http://cran.rstudio.com/"))
-install.packages(c("tidyverse", "lubridate", "ratdat"))
-```
+Run the (Setup.Rmd)[Setup.Rmd] RStudio notebook once.
 
 ## Load
 
diff --git a/prep/Setup.Rmd b/prep/Setup.Rmd
new file mode 100644
index 0000000..5dc484c
--- /dev/null
+++ b/prep/Setup.Rmd
@@ -0,0 +1,23 @@
+---
+output: html_document
+editor_options: 
+  chunk_output_type: console
+---
+# Setup RStudio
+
+Run this Notebook once in an environment to install packages.
+
+Configure mirror
+```{r message=FALSE, warning=FALSE}
+options(repos = list(CRAN="http://cran.rstudio.com/"))
+```
+
+Setup basic packages
+```{r message=FALSE, warning=FALSE}
+install.packages(c("tidyverse", "lubridate", "ratdat"))
+```
+
+Packages from Lesson 1
+```{r message=FALSE, warning=FALSE}
+install.packages("ggplot2")
+```