-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
Amanda Tan
committed
Feb 7, 2022
1 parent
b3d4759
commit 8240915
Showing
3 changed files
with
75 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,16 @@ | ||
| #!/bin/bash -i | ||
|
|
||
| wget -q 'https://repo.anaconda.com/miniconda/Miniconda3-py39_4.10.3-Linux-x86_64.sh' | ||
| chmod ug+x ./Miniconda3-py39_4.10.3-Linux-x86_64.sh | ||
| bash ./Miniconda3-py39_4.10.3-Linux-x86_64.sh -b | ||
|
|
||
| echo 'export PATH="/home/ubuntu/miniconda3/bin:$PATH"' >> ~/.bashrc | ||
|
|
||
| source ~/.bashrc | ||
|
|
||
|
|
||
| conda create -q -y --name myenv | ||
|
|
||
| conda activate myenv | ||
|
|
||
| conda install -y -c conda-forge rasterio |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,59 @@ | ||
| #!/usr/bin/python3 | ||
| import os | ||
| import rasterio | ||
|
|
||
| print('Landsat on AWS:') | ||
| filepath = 'http://landsat-pds.s3.amazonaws.com/c1/L8/042/034/LC08_L1TP_042034_20170616_20170629_01_T1/LC08_L1TP_042034_20170616_20170629_01_T1_B4.TIF' | ||
| with rasterio.open(filepath) as src: | ||
| print(src.profile) | ||
|
|
||
| with rasterio.open(filepath) as src: | ||
| oviews = src.overviews(1) # list of overviews from biggest to smallest | ||
| oview = oviews[-1] # let's look at the smallest thumbnail | ||
| print('Decimation factor= {}'.format(oview)) | ||
| # NOTE this is using a 'decimated read' (http://rasterio.readthedocs.io/en/latest/topics/resampling.html) | ||
| thumbnail = src.read(1, out_shape=(1, int(src.height // oview), int(src.width // oview))) | ||
|
|
||
| print('array type: ',type(thumbnail)) | ||
| print(thumbnail) | ||
|
|
||
| date = '2017-06-16' | ||
| url = 'http://landsat-pds.s3.amazonaws.com/c1/L8/042/034/LC08_L1TP_042034_20170616_20170629_01_T1/' | ||
| redband = 'LC08_L1TP_042034_20170616_20170629_01_T1_B{}.TIF'.format(4) | ||
| nirband = 'LC08_L1TP_042034_20170616_20170629_01_T1_B{}.TIF'.format(5) | ||
|
|
||
| with rasterio.open(url+redband) as src: | ||
| profile = src.profile | ||
| oviews = src.overviews(1) # list of overviews from biggest to smallest | ||
| oview = oviews[1] # Use second-highest resolution overview | ||
| print('Decimation factor= {}'.format(oview)) | ||
| red = src.read(1, out_shape=(1, int(src.height // oview), int(src.width // oview))) | ||
| print(red) | ||
|
|
||
| def calc_ndvi(nir,red): | ||
| '''Calculate NDVI from integer arrays''' | ||
| nir = nir.astype('f4') | ||
| red = red.astype('f4') | ||
| ndvi = (nir - red) / (nir + red) | ||
| return ndvi | ||
|
|
||
| np.seterr(invalid='ignore') | ||
| ndvi = calc_ndvi(nir,red) | ||
| print(ndvi) | ||
|
|
||
| localname = 'LC08_L1TP_042034_20170616_20170629_01_T1_NDVI_OVIEW.tif' | ||
|
|
||
| with rasterio.open(url+nirband) as src: | ||
| profile = src.profile.copy() | ||
|
|
||
| aff = src.transform | ||
| newaff = rasterio.Affine(aff.a * oview, aff.b, aff.c, | ||
| aff.d, aff.e * oview, aff.f) | ||
| profile.update({ | ||
| 'dtype': 'float32', | ||
| 'height': ndvi.shape[0], | ||
| 'width': ndvi.shape[1], | ||
| 'transform': newaff}) | ||
|
|
||
| with rasterio.open(localname, 'w', **profile) as dst: | ||
| dst.write_band(1, ndvi) |
Binary file not shown.