Added some files configuration in order to get grouper app running

Dockerfile

@@ -13,7 +13,6 @@ LABEL ImageOS=centos7
 LABEL Version=$version
 ENV VERSION=$version
 ENV TOMCAT_VERSION="6.0.35"
-
 ENV WAIT_TIME=60
 
 LABEL Build docker build --rm --tag $maintainer/$imagename .
@@ -41,4 +40,4 @@ VOLUME /opt/grouper/2.3.0/apache-tomcat-$TOMCAT_VERSION/logs
 
 EXPOSE 8080 8009 8005
 
-CMD ["/opt/bin/start.sh"]
+CMD ["/opt/bin/start.sh"]

container_files/bin/check.sh

@@ -3,13 +3,13 @@
 log="/tmp/grouper.log"
 
 echo "Installing schema" >> $log
-cd /opt/grouper/2.3.0/grouper.apiBinary-2.3.0 && GROUPER_HOME=/opt/grouper/2.3.0/grouper.apiBinary-2.3.0 bin/gsh.sh -registry -drop -runscript -noprompt
+cd /opt/grouper/2.3.0/grouper.apiBinary-2.3.0 && GROUPER_HOME=/opt/grouper/2.3.0/grouper.apiBinary-2.3.0 bin/gsh.sh -registry -drop -runscript -noprompt >> $log
 
 echo "Preparing subjects" >> $log
-cd /opt/grouper/2.3.0/grouper.apiBinary-2.3.0 && GROUPER_HOME=/opt/grouper/2.3.0/grouper.apiBinary-2.3.0 bin/gsh.sh -registry -runsqlfile /opt/grouper/2.3.0/subjects.sql -noprompt
+cd /opt/grouper/2.3.0/grouper.apiBinary-2.3.0 && GROUPER_HOME=/opt/grouper/2.3.0/grouper.apiBinary-2.3.0 bin/gsh.sh -registry -runsqlfile /opt/grouper/2.3.0/subjects.sql -noprompt >> $log
 
 echo "Adding Quickstart data" >> $log
-cd /opt/grouper/2.3.0/grouper.apiBinary-2.3.0 && GROUPER_HOME=/opt/grouper/2.3.0/grouper.apiBinary-2.3.0 bin/gsh.sh -xmlimportold GrouperSystem /opt/grouper/2.3.0/quickstart.xml -noprompt
+cd /opt/grouper/2.3.0/grouper.apiBinary-2.3.0 && GROUPER_HOME=/opt/grouper/2.3.0/grouper.apiBinary-2.3.0 bin/gsh.sh -xmlimportold GrouperSystem /opt/grouper/2.3.0/quickstart.xml -noprompt >> $log
 
 echo "Checking" >> $log
-cd /opt/grouper/2.3.0/grouper.apiBinary-2.3.0 && GROUPER_HOME=/opt/grouper/2.3.0/grouper.apiBinary-2.3.0 bin/gsh.sh -registry -check >> $log
+cd /opt/grouper/2.3.0/grouper.apiBinary-2.3.0 && GROUPER_HOME=/opt/grouper/2.3.0/grouper.apiBinary-2.3.0 bin/gsh.sh -registry -check >> $log

container_files/bin/cleanup.sh

@@ -1,5 +1,11 @@
 #!/bin/bash
 
-log="/tmp/grouper.log"
-
-rm -f /tmp/firsttimerunning >> $log
+log="/tmp/grouper-cleanup.log"
+date >> $log
+if [ -z ${COMPOSE+x} ];then
+echo "Not composed so not waiting for MariaDB and first time running was ok: " >> $log
+rm -f /tmp/firsttimerunning >> $log
+else
+echo "Composed with MariaDB, running completed" >> $log
+rm -f /tmp/firsttimerunning >> $log
+fi

container_files/bin/configure.sh

@@ -1,7 +1,7 @@
 #!/bin/bash
 
-log="/tmp/grouper.log"
-
+log="/tmp/grouper-configure.log"
+date >> $log
 #sed -i "s|#GROUPER_SYSTEM_PASSWORD#|$GROUPER_SYSTEM_PASSWORD|g" /opt/etc/grouper.installer.properties >> $log
 
 # Long-lived configuration values, these are symlinked into place
@@ -24,4 +24,4 @@ sed -i "s|#MYSQL_DATABASE#|$MYSQL_DATABASE|g" /opt/etc/grouper.properties >> $lo
 
 cat /opt/etc/grouper.hibernate.properties >> $log
 
-cat /opt/etc/grouper.properties >> $log
+cat /opt/etc/grouper.properties >> $log

container_files/bin/main.sh

@@ -1,6 +1,6 @@
 #!/bin/bash -x
 
-log="/tmp/start.log"
+log="/tmp/start-main.log"
 
 echo "Starting Container: " > $log
 date >> $log
@@ -20,5 +20,4 @@ else
     echo "Grouper container has run." >> $log
     echo "If there are problems, docker rm this container and try again." >> $log
 fi
-
 exit 0

container_files/bin/start.sh

@@ -1,7 +1,7 @@
 #!/bin/bash
 
-log="/tmp/start.log"
-
+log="/tmp/start-starting.log"
+date >> $log
 if [ -z ${COMPOSE+x} ]
 then
   echo "Not composed so not waiting for MariaDB: " > $log
@@ -13,18 +13,29 @@ then
       echo "Not composed non-zero exit status: $laststatus"
       exit 1
   else
+      echo "Grouper was configured"
       exit 0
   fi
 else
   echo "Composed so waiting for MariaDB: " > $log
-  /opt/wait-for-it/wait-for-it.sh $MYSQL_HOST:3306 -t $WAIT_TIME --strict --  /opt/bin/main.sh
+  echo "Testing connectivy to database before continue with install"
+  mysql -u $MYSQL_USER -p$MYSQL_PASSWORD -h "$MYSQL_HOST" -e "use grouper; show tables;"
+  laststatus="$?"
+  while [ "$laststatus" != "0" ]; do
+  mysql -u $MYSQL_USER -p$MYSQL_PASSWORD -h "$MYSQL_HOST" -e "use grouper; show tables;"
+  laststatus="$?"
+  sleep 5
+  echo "Trying to connect to mariadb container with $MYSQL_USER to database $MYSQL_DATABASE"
+  done
+  /opt/bin/main.sh
   laststatus="$?"
   echo "Composed status: $laststatus"
   if [ "$laststatus" != "0" ]; then
       echo "Composed non-zero exit status: $laststatus" >> $log
       echo "Composed non-zero exit status: $laststatus"
       exit 1
   else
+      echo "Grouper was configured"
       exit 0
   fi
 fi