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| { | ||
| "cells": [ | ||
| { | ||
| "cell_type": "markdown", | ||
| "id": "898b87d6-96c4-4c9b-9713-fde12d72c176", | ||
| "metadata": {}, | ||
| "source": [ | ||
| "# SKC JupyterLab" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": 1, | ||
| "id": "bff3dc73-02d1-49de-a397-eb086ac17c33", | ||
| "metadata": {}, | ||
| "outputs": [ | ||
| { | ||
| "name": "stdout", | ||
| "output_type": "stream", | ||
| "text": [ | ||
| "3.11.6 | packaged by conda-forge | (main, Oct 3 2023, 10:40:35) [GCC 12.3.0]\n" | ||
| ] | ||
| } | ||
| ], | ||
| "source": [ | ||
| "import sys\n", | ||
| "print(sys.version)" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "markdown", | ||
| "id": "96eedf95-e36d-45af-84a3-ef53016628f9", | ||
| "metadata": {}, | ||
| "source": [ | ||
| "Lessons (Day 1):\n", | ||
| "* https://datacarpentry.org/R-ecology-lesson-alternative/index.html\n", | ||
| "* https://datacarpentry.org/R-ecology-lesson-alternative/introduction-r-rstudio.html\n", | ||
| "* https://datacarpentry.org/R-ecology-lesson-alternative/visualizing-ggplot.html\n", | ||
| "* https://datacarpentry.org/R-ecology-lesson-alternative/how-r-thinks-about-data.html\n", | ||
| "\n", | ||
| "Lessons (Day 2):\n", | ||
| "* https://datacarpentry.org/R-ecology-lesson-alternative/working-with-data.html\n", | ||
| "* https://datacarpentry.org/R-ecology-lesson/05-r-and-databases.html" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": null, | ||
| "id": "8d33cae3-32d9-431a-b806-0556792fb840", | ||
| "metadata": {}, | ||
| "outputs": [], | ||
| "source": [] | ||
| } | ||
| ], | ||
| "metadata": { | ||
| "kernelspec": { | ||
| "display_name": "Python 3 (ipykernel)", | ||
| "language": "python", | ||
| "name": "python3" | ||
| }, | ||
| "language_info": { | ||
| "codemirror_mode": { | ||
| "name": "ipython", | ||
| "version": 3 | ||
| }, | ||
| "file_extension": ".py", | ||
| "mimetype": "text/x-python", | ||
| "name": "python", | ||
| "nbconvert_exporter": "python", | ||
| "pygments_lexer": "ipython3", | ||
| "version": "3.11.6" | ||
| } | ||
| }, | ||
| "nbformat": 4, | ||
| "nbformat_minor": 5 | ||
| } |
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| --- | ||
| output: html_document | ||
| editor_options: | ||
| chunk_output_type: console | ||
| --- | ||
| # Lesson Prep | ||
|
|
||
| ## Setup | ||
|
|
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| Update Tools with "Tools -\> Update" (do not pin) - takes a long time - don't do in class | ||
|
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| To have output go in console set in the config for the Rmd file set "chunk output in console" | ||
|
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| To view Rmd rendered (click Knit to html) in seprate windows select settings of the Rmd file and select "Preview in Window" | ||
|
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| Install Packages | ||
|
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| ```{r message=FALSE, warning=FALSE} | ||
| options(repos = list(CRAN="http://cran.rstudio.com/")) | ||
| install.packages(c("tidyverse", "lubridate", "ratdat")) | ||
| ``` | ||
|
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| ## Load | ||
|
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| ```{r} | ||
| library(tidyverse) | ||
| library(lubridate) | ||
| library(ratdat) | ||
| ``` | ||
|
|
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| ## Lessons Snippits | ||
|
|
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| ```{r} | ||
| install.packages("ggplot2") | ||
| ``` | ||
|
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| ```{r} | ||
| library(ggplot2) | ||
| library(ratdat) | ||
| ?complete_old | ||
| ``` | ||
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| ```{r} | ||
| # View(complete_old) | ||
| ``` | ||
|
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| ```{r} | ||
| str(complete_old) | ||
| ``` | ||
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| ```{r} | ||
| ggplot(data = complete_old) | ||
| ``` | ||
|
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| ```{r} | ||
| ggplot(data = complete_old, mapping = aes(x = weight, y = hindfoot_length)) | ||
| ``` | ||
|
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| ```{r} | ||
| ggplot(data = complete_old, mapping = aes(x = weight, y = hindfoot_length)) + | ||
| geom_point() | ||
| ``` | ||
| ## Presentatin Style | ||
|
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| Top/bottom | ||
| ```{r} | ||
| 1+2 | ||
| 3+4 | ||
| print('Hello World') | ||
| ``` | ||
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